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  • Biomartr: genomic data retrieval with R 

    Drost, H-G; Paszkowski, J
    $\textbf{MOTIVATION}$: Retrieval and reproducible functional annotation of genomic data are crucial in biology. However, the current poor usability and transparency of retrieval methods hinders reproducibility. Here we ...
  • Cytosine methylation at CpCpG sites triggers accumulation of non-CpG methylation in gene bodies 

    Zabet, NR; Catoni, M; Prischi, F; Paszkowski, J
    Methylation of cytosine is an epigenetic mark involved in the regulation of transcription, usually associated with transcriptional repression. In mammals, methylated cytosines are found predominantly in CpGs but in plants ...
  • DNA sequence properties that predict susceptibility to epiallelic switching. 

    Catoni, M; Griffiths, J; Becker, C; Zabet, NR; Bayon, C; Dapp, M; Lieberman-Lazarovich, M et al. (Nature Publishing Group, 2017-03-01)
    Transgenerationally heritable epialleles are defined by the stable propagation of alternative transcriptional states through mitotic and meiotic cell cycles. Given that the propagation of DNA methylation at CpG sites, ...
  • Frequency doubling in the cyanobacterial circadian clock 

    Martins, BM; Das, AK; Antunes, L; Locke, JC (EMBO Press, 2016-12-01)
    Organisms use circadian clocks to generate 24-h rhythms in gene expression. However, the clock can interact with other pathways to generate shorter period oscillations. It remains unclear how these different frequencies ...

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