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dc.contributor.authorSchofield, Ellenen
dc.contributor.authorCarver, Ten
dc.contributor.authorAchuthan, Pen
dc.contributor.authorFreire-Pritchett, Pen
dc.contributor.authorSpivakov, Men
dc.contributor.authorTodd, Johnen
dc.contributor.authorBurren, Oliveren
dc.date.accessioned2016-05-03T14:18:40Z
dc.date.available2016-05-03T14:18:40Z
dc.date.issued2016-04-08en
dc.identifier.citationBioinformatics 2016, doi: 10.1093/bioinformatics/btw173en
dc.identifier.issn1367-4803
dc.identifier.urihttps://www.repository.cam.ac.uk/handle/1810/255843
dc.description.abstractSummary: Promoter capture Hi-C (PCHi-C) allows the genome-wide interrogation of physical interactions between distal DNA regulatory elements and gene promoters in multiple tissue contexts. Visual integration of the resultant chromosome interaction maps with other sources of genomic annotations can provide insight into underlying regulatory mechanisms. We have developed Capture HiC Plotter (CHiCP), a web-based tool that allows interactive exploration of PCHi-C interaction maps and integration with both public and user-defined genomic datasets. Availability and Implementation: CHiCP is freely accessible from www.chicp.org and supports most major HTML5 compliant web browsers. Full source code and installation instructions are available from http://github.com/D-I-L/django-chicp. Contact: ob219@cam.ac.uk
dc.languageEnglishen
dc.language.isoenen
dc.publisherOxford University Press
dc.rightsAttribution 2.0 UK: England & Wales*
dc.rights.urihttp://creativecommons.org/licenses/by/2.0/uk/*
dc.titleCHiCP: a web-based tool for the integrative and interactive visualization of promoter capture Hi-C datasetsen
dc.typeArticle
dc.description.versionThis is the published version. It first appeared at http://bioinformatics.oxfordjournals.org/content/early/2016/04/26/bioinformatics.btw173.en
prism.endingPage2513
prism.publicationDate2016en
prism.publicationNameBioinformaticsen
prism.startingPage2511
prism.volume32en
pubs.volume32
dcterms.dateAccepted2016-03-23en
rioxxterms.versionofrecord10.1093/bioinformatics/btw173en
rioxxterms.versionVoR
rioxxterms.licenseref.urihttp://www.rioxx.net/licenses/all-rights-reserveden
rioxxterms.licenseref.startdate2016-04-08en
dc.contributor.orcidSchofield, Ellen [0000-0003-0648-1418]
dc.contributor.orcidBurren, Oliver [0000-0002-3388-5760]
dc.identifier.eissn1367-4811
rioxxterms.typeJournal Article/Reviewen
pubs.funder-project-idWellcome Trust (100140/Z/12/Z)
pubs.funder-project-idWellcome Trust (091157/Z/10/B)
pubs.funder-project-idBiotechnology and Biological Sciences Research Council (BBS/E/B/000C0405)
pubs.funder-project-idBiotechnology and Biological Sciences Research Council (BBS/E/B/000C0404)


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Attribution 2.0 UK: England & Wales
Except where otherwise noted, this item's licence is described as Attribution 2.0 UK: England & Wales