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Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter.

Published version
Peer-reviewed

Type

Article

Change log

Authors

Sengar, Anjali 
Vandana, J Jeya 
Chambers, Vicki S 
Di Antonio, Marco 
Winnerdy, Fernaldo Richtia 

Abstract

Poly (ADP-ribose) polymerase 1 (PARP1) has emerged as an attractive target for cancer therapy due to its key role in DNA repair processes. Inhibition of PARP1 in BRCA-mutated cancers has been observed to be clinically beneficial. Recent genome-mapping experiments have identified a non-canonical G-quadruplex-forming sequence containing bulges within the PARP1 promoter. Structural features, like bulges, provide opportunities for selective chemical targeting of the non-canonical G-quadruplex structure within the PARP1 promoter, which could serve as an alternative therapeutic approach for the regulation of PARP1 expression. Here we report the G-quadruplex structure formed by a 23-nucleotide G-rich sequence in the PARP1 promoter. Our study revealed a three-layered intramolecular (3+1) hybrid G-quadruplex scaffold, in which three strands are oriented in one direction and the fourth in the opposite direction. This structure exhibits unique structural features such as an adenine bulge and a G·G·T base triple capping structure formed between the central edgewise loop, propeller loop and 5' flanking terminal. Given the highly important role of PARP1 in DNA repair and cancer intervention, this structure presents an attractive opportunity to explore the therapeutic potential of PARP1 inhibition via G-quadruplex DNA targeting.

Description

Keywords

Adenine, DNA, DNA Repair, G-Quadruplexes, Guanine, Humans, Nuclear Magnetic Resonance, Biomolecular, Nucleic Acid Conformation, Poly (ADP-Ribose) Polymerase-1, Promoter Regions, Genetic

Journal Title

Nucleic Acids Res

Conference Name

Journal ISSN

0305-1048
1362-4962

Volume Title

47

Publisher

Oxford University Press (OUP)
Sponsorship
Cancer Research UK (18618)
Cancer Research UK (CB4330)
Wellcome Trust (099232/Z/12/Z)
Singapore National Research Foundation Investigatorship [NRF-NRFI2017-09]; Nanyang Technological University (NTU Singapore) (to A.T.P.); The Balasubramanian laboratory is core-funded by Cancer Research UK [C14303/A17197]; Cancer Research UK programme [C9681/A18618]; S.B. is a Welcome Trust Senior Investigator [099232/Z/12/Z]; The authors acknowledge the use of NMR facilities at the NTU Institute of Structural Biology. Funding for open access charge: Singapore National Research Foundation.