Standards for plant synthetic biology: a common syntax for exchange of DNA parts.
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Authors
Patron, Nicola J
Orzaez, Diego
Marillonnet, Sylvestre
Warzecha, Heribert
Matthewman, Colette
Youles, Mark
Raitskin, Oleg
Leveau, Aymeric
Farré, Gemma
Rogers, Christian
Locke, James
Ajioka, James
Zipfel, Cyril
Kamoun, Sophien
Jones, Jonathan DG
Kuhn, Hannah
Robatzek, Silke
Van Esse, H Peter
Sanders, Dale
Martin, Cathie
Field, Rob
O'Connor, Sarah
Fox, Samantha
Wulff, Brande
Miller, Ben
Breakspear, Andy
Radhakrishnan, Guru
Delaux, Pierre-Marc
Loqué, Dominique
Granell, Antonio
Tissier, Alain
Shih, Patrick
Brutnell, Thomas P
Quick, W Paul
Rischer, Heiko
Fraser, Paul D
Aharoni, Asaph
Raines, Christine
South, Paul F
Ané, Jean-Michel
Hamberger, Björn R
Langdale, Jane
Stougaard, Jens
Bouwmeester, Harro
Udvardi, Michael
Murray, James AH
Ntoukakis, Vardis
Schäfer, Patrick
Denby, Katherine
Edwards, Keith J
Osbourn, Anne
Publication Date
2015-10-01Journal Title
New Phytologist
ISSN
1469-8137
Publisher
Blackwell Publishing Inc.
Volume
208
Issue
1
Pages
13-19
Language
eng
Type
Article
This Version
VoR
Metadata
Show full item recordCitation
Patron, N. J., Orzaez, D., Marillonnet, S., Warzecha, H., Matthewman, C., Youles, M., Raitskin, O., et al. (2015). Standards for plant synthetic biology: a common syntax for exchange of DNA parts.. New Phytologist, 208 (1), 13-19. https://doi.org/10.1111/nph.13532
Abstract
Inventors in the field of mechanical and electronic engineering can access multitudes of components and, thanks to standardization, parts from different manufacturers can be used in combination with each other. The introduction of BioBrick standards for the assembly of characterized DNA sequences was a landmark in microbial engineering, shaping the field of synthetic biology. Here, we describe a standard for Type IIS restriction endonuclease-mediated assembly, defining a common syntax of 12 fusion sites to enable the facile assembly of eukaryotic transcriptional units. This standard has been developed and agreed by representatives and leaders of the international plant science and synthetic biology communities, including inventors, developers and adopters of Type IIS cloning methods. Our vision is of an extensive catalogue of standardized, characterized DNA parts that will accelerate plant bioengineering.
Keywords
DNA assembly, GoldenGate, Type IIS restriction endonucleases, cloning, genetic syntax, synthetic biology, Botany, Cloning, Molecular, DNA, Deoxyribonucleases, Type II Site-Specific, Eukaryota, Genetic Engineering, Plants, Plants, Genetically Modified, Plasmids, Reference Standards, Synthetic Biology, Transcription, Genetic
Sponsorship
Biotechnological and Biological Sciences Research Council (BBSRC). Grant Numbers: BB/K005952/1, BB/L02182X/1
Synthetic Biology Research Centre ‘OpenPlant’ award. Grant Number: BB/L014130/1
Spanish MINECO. Grant Number: BIO2013‐42193‐R
Engineering Nitrogen Symbiosis for Africa (ENSA)
The Bill & Melinda Gates Foundation
US Department of Energy, Office of Biological and Environmental. Grant Number: DE‐AC02‐05CH1123
COST Action. Grant Number: FA1006
Funder references
BBSRC (BB/L014130/1)
BBSRC (BB/I00680X/1)
BBSRC (via University College London (UCL)) (FCAGF)
BBSRC (BB/D011043/1)
BBSRC (BB/M018180/1)
BBSRC (BB/K003712/1)
BBSRC (BB/L011476/1)
BBSRC (BB/L02182X/1)
Biotechnology and Biological Sciences Research Council (BB/L002957/1)
Identifiers
External DOI: https://doi.org/10.1111/nph.13532
This record's URL: https://www.repository.cam.ac.uk/handle/1810/293594
Rights
Licence:
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