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Protein disorder-to-order transition enhances the nucleosome-binding affinity of H1.

Published version
Peer-reviewed

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Type

Article

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Authors

Sridhar, Akshay 
Orozco, Modesto 
Collepardo-Guevara, Rosana  ORCID logo  https://orcid.org/0000-0003-1781-7351

Abstract

Intrinsically disordered proteins are crucial elements of chromatin heterogenous organization. While disorder in the histone tails enables a large variation of inter-nucleosome arrangements, disorder within the chromatin-binding proteins facilitates promiscuous binding to a wide range of different molecular targets, consistent with structural heterogeneity. Among the partially disordered chromatin-binding proteins, the H1 linker histone influences a myriad of chromatin characteristics including compaction, nucleosome spacing, transcription regulation, and the recruitment of other chromatin regulating proteins. Although it is now established that the long C-terminal domain (CTD) of H1 remains disordered upon nucleosome binding and that such disorder favours chromatin fluidity, the structural behaviour and thereby the role/function of the N-terminal domain (NTD) within chromatin is yet unresolved. On the basis of microsecond-long parallel-tempering metadynamics and temperature-replica exchange atomistic molecular dynamics simulations of different H1 NTD subtypes, we demonstrate that the NTD is completely unstructured in solution but undergoes an important disorder-to-order transition upon nucleosome binding: it forms a helix that enhances its DNA binding ability. Further, we show that the helical propensity of the H1 NTD is subtype-dependent and correlates with the experimentally observed binding affinity of H1 subtypes, suggesting an important functional implication of this disorder-to-order transition.

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Keywords

DNA, Histones, Humans, Intrinsically Disordered Proteins, Molecular Dynamics Simulation, Nucleic Acid Conformation, Nucleosomes, Peptides, Protein Binding, Protein Domains

Journal Title

Nucleic Acids Res

Conference Name

Journal ISSN

0305-1048
1362-4962

Volume Title

48

Publisher

Oxford University Press (OUP)
Sponsorship
Engineering and Physical Sciences Research Council (EP/P020259/1)
European Research Council (803326)
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