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RNA-Seq reveals changes in human placental metabolism, transport and endocrinology across the first-second trimester transition.

Accepted version
Peer-reviewed

Type

Article

Change log

Authors

Prater, Malwina 
Hamilton, Russell S  ORCID logo  https://orcid.org/0000-0002-0598-3793
Wa Yung, Hong 
Sharkey, Andrew M 

Abstract

The human placenta is exposed to major environmental changes towards the end of the first trimester associated with full onset of the maternal arterial placental circulation. Changes include a switch from histotrophic to hemotrophic nutrition, and a threefold rise in the intraplacental oxygen concentration. We evaluated their impact on trophoblast development and function using RNA-sequencing (RNA-Seq) and DNA-methylation analyses performed on the same chorionic villous samples at 7-8 (n=8) and 13-14 (n=6) weeks of gestation. Reads were adjusted for fetal sex. Most DEGs were associated with protein processing in the endoplasmic reticulum (ER), hormone secretion, transport, extracellular matrix, vasculogenesis, and reactive oxygen species metabolism. Transcripts higher in the first trimester were associated with synthesis and ER processing of peptide hormones, and glycolytic pathways. Transcripts encoding proteins mediating transport of oxygen, lipids, protein, glucose, and ions were significantly increased in the second trimester. The motifs of CBX3 and BCL6 were significantly overrepresented, indicating the involvement of these transcription factor networks in the regulation of trophoblast migration, proliferation and fusion. These findings are consistent with a high level of cell proliferation and hormone secretion by the early placenta to secure implantation in a physiological low-oxygen environment.

Description

Keywords

Early placenta, Human pregnancy, Metabolism, Methylation, Transcriptome, Biomarkers, Computational Biology, Energy Metabolism, Female, Gene Expression Profiling, Gene Expression Regulation, Gene Ontology, Humans, Immunohistochemistry, Molecular Sequence Annotation, Placenta, Pregnancy, Pregnancy Trimester, First, Pregnancy Trimester, Second, RNA-Seq

Journal Title

Biol Open

Conference Name

Journal ISSN

2046-6390
2046-6390

Volume Title

10

Publisher

The Company of Biologists

Rights

All rights reserved
Sponsorship
Medical Research Council (MR/L020041/1)
Medical Research Council (MR/P001092/1)
MRC (G9701485)