Early fibrotic niches establish tumour-permissive microenvironments.
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Pathologic transformation represents a critical yet poorly defined window during which mutant epithelial stem cells actively construct the microenvironment that enables tumour initiation1,2. Here using integrated single-cell, spatial and functional analyses, we define the earliest multicellular events that licence this transition following oncogenic activation in the lung. KrasG12D-mutant alveolar type II cells rapidly adopt regenerative-like states that act as signalling hubs, orchestrating coordinated stromal and immune reprogramming while enhancing epithelial plasticity. Through secretion of amphiregulin, mutant epithelial cells activate EGFR signalling in adjacent fibroblasts, inducing a fibrotic, injury-like programme. Reprogrammed fibroblasts, in turn, expand and reprogramme alveolar macrophages, amplifying inflammatory signalling and reinforcing epithelial plasticity. These reciprocal interactions establish a self-sustaining epithelial-stromal-immune circuit that generates a tumour-permissive niche before malignant outgrowth. Disruption of the amphiregulin-EGFR axis prevents early niche formation and abrogates tumour initiation. Conservation of this programme in KRASG12D-inducible human alveolar organoids and early-stage lung adenocarcinoma tissues identifies epithelial-microenvironment communication as a therapeutically actionable vulnerability and suggests that intercepting niche formation may prevent progression to treatment-resistant disease.
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Acknowledgements: We thank members of the Lee laboratory for discussions; C. Rudin for coordinating the acquisition of human lung tissue; and the Royal Papworth Hospital NHS Foundation Trust, NIHR Cambridge BRC Cell Phenotyping Hub, Cambridge Research UK Cancer Institute Genomics Core Facility, UBS Biofacility, Cambridge Stem Cell Institute Core Facilities, Sloan Kettering Institute′s Molecular Cytology Core Facility, Sloan Kettering Institute′s Flow Cytometry Core Facility and GIST Advanced Institute of Instrumental Analysis for technical assistance. This study was supported by a Wellcome Trust Senior Research Fellowship (221857/Z/20/Z) and Suh Kyung-bae Foundation Award (SUHF-20010033). J.C. was supported by the National Research Foundation of Korea grant funded by the Korean government (MSIT) (NRF-2022R1A2C1091644, RS-2024-00438368 and RS-2024-00411768) and by the Ministry of Health and Welfare (RS-2025-25459531 and RS-2025-24536036). H.L. was supported by the National Research Foundation (RS-2025-25428221). F.J.E. was supported by a Wellcome PhD Studentship (220088/Z/20/Z). B.D.S. is supported by the Wellcome Trust (219478/Z/19/Z) and the Royal Society EP Abraham Research Professorship (RP\R\231004).
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1476-4687
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Wellcome Trust (219478/Z/19/Z)
National Institute for Health Research (NIHR) (via Imperial College London) (200880)
Royal Society (RSRP\R\231004)

