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A unique mRNA decapping complex in trypanosomes.

Published version
Peer-reviewed

Repository DOI


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Authors

Karolak, Natalia Katarzyna 
Odenwald, Johanna 
Gabiatti, Bernardo 
Castañeda Londoño, Paula Andrea 

Abstract

Removal of the mRNA 5' cap primes transcripts for degradation and is central for regulating gene expression in eukaryotes. The canonical decapping enzyme Dcp2 is stringently controlled by assembly into a dynamic multi-protein complex together with the 5'-3'exoribonuclease Xrn1. Kinetoplastida lack Dcp2 orthologues but instead rely on the ApaH-like phosphatase ALPH1 for decapping. ALPH1 is composed of a catalytic domain flanked by C- and N-terminal extensions. We show that T. brucei ALPH1 is dimeric in vitro and functions within a complex composed of the trypanosome Xrn1 ortholog XRNA and four proteins unique to Kinetoplastida, including two RNA-binding proteins and a CMGC-family protein kinase. All ALPH1-associated proteins share a unique and dynamic localization to a structure at the posterior pole of the cell, anterior to the microtubule plus ends. XRNA affinity capture in T. cruzi recapitulates this interaction network. The ALPH1 N-terminus is not required for viability in culture, but essential for posterior pole localization. The C-terminus, in contrast, is required for localization to all RNA granule types, as well as for dimerization and interactions with XRNA and the CMGC kinase, suggesting possible regulatory mechanisms. Most significantly, the trypanosome decapping complex has a unique composition, differentiating the process from opisthokonts.

Description

Acknowledgements: We are grateful to the FingerPrints proteomics facility at the University of Dundee and the OMICS Proteomics BIOCEV core facility for excellent technical service. We also thank the Mass Spectrometry facility P02-004 at Fiocruz-Carlos Chagas Institute and the Core Facility for Crystallography and Biophysics (University of Warsaw) for valuable support. We thank Andrea Reichert for her work on the phenotypic analysis of ALPH1ΔN/– cells, Nico Ankenbrand for technical assistance and Tim Krüger for help with imaging (all University of Würzburg).


Funder: CAPES; doi: https://doi.org/10.13039/501100002322


Funder: Foundation for Polish Science; doi: https://doi.org/10.13039/501100001870


Funder: Fiocruz Technological Platform program


Funder: University library Würzburg

Keywords

Endoribonucleases, RNA Caps, RNA Stability, RNA, Messenger, RNA-Binding Proteins, Trypanosoma

Journal Title

Nucleic Acids Res

Conference Name

Journal ISSN

0305-1048
1362-4962

Volume Title

51

Publisher

Oxford University Press (OUP)
Sponsorship
Wellcome Trust (217138/Z/19/Z)