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Research Data Supporting "Natural variation in Arabidopsis shoot branching plasticity in response to nitrate supply affects fitness"

Repository URI

https://www.repository.cam.ac.uk/handle/1810/296168

Repository DOI

https://doi.org/10.17863/CAM.20379
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Files

data.zip (85.86 KB)
 data_processed.zip (319.59 MB)
 publication_deJong2019_Nplasticity-0.1.0.zip (312.02 KB)

Type

Dataset

Change log

Authors

De Jong, M 
Monteiro Pais Tavares, Hugo  ORCID logo  https://orcid.org/0000-0001-9373-2726
Pasam, Raj 
Butler, Rebecca 
Ward, Sally 
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Description

This repository contains all data and analysis scripts used in this publication. There are three compressed folders (in .zip format).

"data.zip" contains all the raw data files. The directory contains a README file, with a description of all the data files.

"data_processed.zip" contains processed data files required to reproduce figures in the paper. As above, there is a README file, with a description of each file.

"publication_deJong2019_Nplasticity-0.1.0.zip" contains the analysis scripts used for the analysis. These are also available from: https://github.com/tavareshugo/publication_deJong2019_Nplasticity. We advise that you get the latest version of the code from there. The README contains instructions of how the directory structure should be organised.

Version

Software / Usage instructions

Data files are provided in two formats. CSV format, which can be opened with any text editor or spreadsheet program (e.g. Excel). RDS format, which can be read into R. Script files are provided for R programming language and can be opened and run using R and RStudio. There is also a python script (runs with python2) and several shell scripts (that run on Linux operating system).

Keywords

Arabidopsis, quantitative genetics, development, plasticity, nitrate

Publisher

Rights

Attribution 4.0 International (CC BY 4.0) Repository logo
Sponsorship
European Research Council (294514)
Gatsby Charitable Foundation (GAT3395/PR1)
This work was funded by a James Burgess Studentship to GG (https://www.york.ac.uk/biology/postgraduate/jamesburgessscholarship/); a Marie Currie Fellowship (PIEF-GA-2009-252761) from the European Commission (https://ec.europa.eu/research/fp7/index_en.cfm) to MdJ; and research grants to OL from the Gatsby Charitable Foundation (GAT3395/PR1 and GAT3071) (https://www.gatsby.org.uk/) and the European Research Council (No. 294514 – EnCoDe) (https://ec.europa.eu/research/fp7/index_en.cfm).
Relationships
https://github.com/tavareshugo/publication_deJong2019_Nplasticity
 https://github.com/tavareshugo/atMAGIC
Supplements:
https://doi.org/10.1371/journal.pgen.1008366

Collections

Research Data - Sainsbury Laboratory