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An Upstream G-Quadruplex DNA Structure Can Stimulate Gene Transcription.

Published version
Peer-reviewed

Repository DOI


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Abstract

Four-stranded G-quadruplexes (G4s) are DNA secondary structures that can form in the human genome. G4 structures have been detected in gene promoters and are associated with transcriptionally active chromatin and the recruitment of transcription factors and chromatin remodelers. We adopted a controlled, synthetic biology approach to understand how G4s can influence transcription. We stably integrated G4-forming sequences into the promoter of a synthetic reporter gene and inserted these into the genome of human cells. The integrated G4 sequences were shown to fold into a G4 structure within a cellular genomic context. We demonstrate that G4 structure formation within a gene promoter stimulates transcription compared to the corresponding G4-negative control promoter in a way that is not dependent on primary sequence or inherent G-richness. Systematic variation in the stability of folded G4s showed that in this system, transcriptional levels increased with higher stability of the G4 structure. By creating and manipulating a chromosomally integrated synthetic promoter, we have shown that G4 structure formation in a defined gene promoter can cause gene transcription to increase, which aligns with earlier observational correlations reported in the literature linking G4s to active transcription.

Description

Publication status: Published

Keywords

Humans, G-Quadruplexes, DNA, Promoter Regions, Genetic, Transcription, Genetic, Chromatin

Journal Title

ACS Chem Biol

Conference Name

Journal ISSN

1554-8929
1554-8937

Volume Title

19

Publisher

American Chemical Society (ACS)
Sponsorship
Cancer Research UK (CB4330)
Cancer Research UK (C9681/A29214)
Wellcome Trust (209441/Z/17/Z)
Herchel Smith Funds