Pulsed SILAC as a Approach for miRNA Targets Identification in Cell Culture.
Accepted version
Peer-reviewed
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Repository DOI
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Authors
Duque-Guimarães, Daniella E
de Almeida-Faria, Juliana
Ong, Thomas Prates
Ozanne, Susan E
Abstract
Pulsed stable isotope labeling by amino acids in cell culture (pSILAC) comprises a variation of the classical SILAC proteomic methodology that enables the identification of short-term proteomic responses such as those elicited by micro RNAs (miRNAs). Here, we describe a detailed pSILAC protocol for global identification and quantification of protein translation alterations induced by a miRNA using 3T3-L1 pre-adipocytes as a model system.
Description
Keywords
Cell culture, MicroRNAs, Proteomics, Pulsed stable isotope labeling by amino acids, Targets, Amino Acids, Cell Culture Techniques, Cells, Cultured, Gene Expression Regulation, Humans, Isotope Labeling, MicroRNAs, Protein Biosynthesis, Proteomics, RNA Interference, RNA, Messenger, Software, Workflow
Journal Title
Methods Mol Biol
Conference Name
Journal ISSN
1064-3745
1940-6029
1940-6029
Volume Title
1546
Publisher
Springer New York
Publisher DOI
Sponsorship
Medical Research Council (MC_UU_12012/4)
Biotechnology and Biological Sciences Research Council (BB/M001636/1)
British Heart Foundation (None)
British Heart Foundation (None)
Medical Research Council (MC_PC_12012)
Biotechnology and Biological Sciences Research Council (BB/M001636/1)
British Heart Foundation (None)
British Heart Foundation (None)
Medical Research Council (MC_PC_12012)