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The Nucleosome Remodeling and Deacetylase Complex NuRD is built from preformed catalytically active sub-modules

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Peer-reviewed

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Authors

Zhang, W. 
Aubert, A. 
Gomez de Segura, J. M. 
Karuppasamy, M. 
Basu, S. 

Abstract

The Nucleosome Remodeling Deacetylase (NuRD) complex is a highly conserved regulator of chromatin structure and transcription. Structural studies have shed light on this and other chromatin modifying machines, but much less is known about how they assemble and whether stable and functional sub-modules exist that retain enzymatic activity. Purification of the endogenous Drosophila NuRD complex shows that it consists of a stable core of subunits, while others, in particular the chromatin remodeller CHD4, associate transiently. To dissect the assembly and activity of NuRD, we systematically produced all possible combinations of different components using the MultiBac system, and determined their activity and biophysical properties. We carried out single molecule imaging of CHD4 in live mouse ES cells, in the presence and absence of one of core components (MBD3), to show how the core deacetylase and chromatin-remodeling sub-modules associate in-vivo. Our experiments suggest a pathway for the assembly of NuRD via preformed and active sub-modules. These retain enzymatic activity and are present in both the nucleus and the cytosol, an outcome with important implications for understanding NuRD function.

Description

This is the author accepted manuscript. The final version is available from Elsevier via http://dx.doi.org/10.1016/j.jmb.2016.04.025

Keywords

chromatin-remodeling, complex assembly, histone modification, nucleosome remodeling and deacetylase NuRD, transcription

Journal Title

Journal of Molecular Biology

Conference Name

Journal ISSN

Volume Title

428

Publisher

Elsevier
Sponsorship
This work was supported by the European Commission Framework Program 7 integrated project 4DCellFate (contract nr. 277899), the Medical Research Council (MR/M010082/1, to EDL), and the Wellcome Trust (to IB and BH).