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Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells.

Published version
Peer-reviewed

Type

Article

Change log

Authors

La Manno, Gioele 
Gyllborg, Daniel 
Codeluppi, Simone 
Nishimura, Kaneyasu 
Salto, Carmen 

Abstract

Understanding human embryonic ventral midbrain is of major interest for Parkinson's disease. However, the cell types, their gene expression dynamics, and their relationship to commonly used rodent models remain to be defined. We performed single-cell RNA sequencing to examine ventral midbrain development in human and mouse. We found 25 molecularly defined human cell types, including five subtypes of radial glia-like cells and four progenitors. In the mouse, two mature fetal dopaminergic neuron subtypes diversified into five adult classes during postnatal development. Cell types and gene expression were generally conserved across species, but with clear differences in cell proliferation, developmental timing, and dopaminergic neuron development. Additionally, we developed a method to quantitatively assess the fidelity of dopaminergic neurons derived from human pluripotent stem cells, at a single-cell level. Thus, our study provides insight into the molecular programs controlling human midbrain development and provides a foundation for the development of cell replacement therapies.

Description

Keywords

dopaminergic neuron, human, mouse, single-cell RNA-seq, ventral midbrain, Animals, Cell Line, Cellular Reprogramming Techniques, Dopaminergic Neurons, Humans, Machine Learning, Mesencephalon, Mice, Neural Stem Cells, Neurogenesis, Neuroglia, Pluripotent Stem Cells, Sequence Analysis, RNA, Single-Cell Analysis

Journal Title

Cell

Conference Name

Journal ISSN

0092-8674
1097-4172

Volume Title

167

Publisher

Elsevier BV
Sponsorship
Medical Research Council (MC_PC_12009)
All authors were supported by EU FP7 grant DDPDGENES. S.L. was supported by European Research Council grant 261063 (BRAINCELL), Knut and Alice Wallenberg Foundation grant 2015.0041, Swedish Research Council (STARGET), and the Swedish Foundation for Strategic Research (RIF14-0057). A.Z. was supported by the Human Frontier Science Program. E.A. was supported by Swedish Research Council (VR projects: 2011-3116 and 2011-3318), Swedish Foundation for Strategic Research (SRL program), and Karolinska Institutet (SFO Thematic Center in Stem cells and Regenerative Medicine). E.A. and R.A.B. were supported by the EU FP7 grant NeuroStemcellRepair. R.A.B. was also supported by an NIHR Biomedical Research Centre award to the University of Cambridge/Addenbrookes Hospital. iCell dopaminergic neurons were a generous gift from Cellular Dynamics International. Single-cell RNA-seq servic0es were provided by the Eukaryotic Single-cell Genomics facility and the National Genomics Infrastructure at Science for Life Laboratory.