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2'-$\textit{0}$-Methyl-5-hydroxymethylcytidine: A Second Oxidative Derivative of 5-Methylcytidine in RNA

Accepted version
Peer-reviewed

Type

Article

Change log

Authors

Huber, SM 
Miska, EA 
Balasubramanian, Shankar  ORCID logo  https://orcid.org/0000-0002-0281-5815

Abstract

5-Hydroxymethylcytidine (hm5C) was recently identified as a direct metabolite of m5C in RNA. We investigated the stability of hm5C in human cells using bio-isotopologues and LC-MS/HRMS. This has led to the discovery of a second oxidative metabolite of m5C in RNA, namely 2′-0-methyl-5-hydroxymethylcytidine (hm5Cm). Subsequent quantitative analysis of total RNA from higher organisms revealed varying levels and TET-independent formation of this new RNA modification.

Description

Keywords

Animals, Brain, Chromatography, Liquid, Cytidine, HEK293 Cells, Humans, Mice, Molecular Structure, Oxidation-Reduction, RNA, Tandem Mass Spectrometry

Journal Title

Journal of the American Chemical Society

Conference Name

Journal ISSN

0002-7863
1520-5126

Volume Title

139

Publisher

American Chemical Society
Sponsorship
Wellcome Trust (099232/Z/12/Z)
This work was supported by a Wellcome Trust Senior Investigator award to SB (grant no. 099232/z/12/z). The Balasubramanian group is supported by core funding from Cancer Research U.K. (C14303/A17197).