InterMine: extensive web services for modern biology.

Kalderimis, Alex; Lyne, Rachel; Butano, Daniela; Contrino, Sergio; Lyne, Mike; Heimbach, Joshua; Hu, Fengyuan; Smith, Richard; Stěpán, Radek; Sullivan, Julie; Micklem, Gos

View / Open Files

Published version (PDF, 526Kb)

Authors

Kalderimis, Alex

Lyne, Rachel

Butano, Daniela

Contrino, Sergio

Lyne, Mike

Heimbach, Joshua

Hu, Fengyuan

Publication Date

2014-07

Journal Title

Nucleic Acids Res

ISSN

0305-1048

Publisher

Oxford University Press (OUP)

Volume

Issue

Web Server issue

Pages

W468-W472

Language

eng

Type

Article

Physical Medium

Print-Electronic

Metadata

Show full item record

Citation

Kalderimis, A., Lyne, R., Butano, D., Contrino, S., Lyne, M., Heimbach, J., Hu, F., et al. (2014). InterMine: extensive web services for modern biology.. Nucleic Acids Res, 42 (Web Server issue), W468-W472. https://doi.org/10.1093/nar/gku301

Abstract

InterMine (www.intermine.org) is a biological data warehousing system providing extensive automatically generated and configurable RESTful web services that underpin the web interface and can be re-used in many other applications: to find and filter data; export it in a flexible and structured way; to upload, use, manipulate and analyze lists; to provide services for flexible retrieval of sequence segments, and for other statistical and analysis tools. Here we describe these features and discuss how they can be used separately or in combinations to support integrative and comparative analysis.

Keywords

Animals, Chromosomes, Databases, Factual, Humans, Internet, Mice, Sequence Analysis, DNA, Software, User-Computer Interface

Sponsorship

National Human Genome Research Institute (R01HG004834)

Wellcome Trust (099133/Z/12/Z)

National Institutes of Health (NIH) (via Ontario Institute for Cancer Research (OICR)) (U41HG0004269-05S1)

Wellcome Trust (090297/Z/09/Z)

Identifiers

External DOI: https://doi.org/10.1093/nar/gku301

This record's URL: https://www.repository.cam.ac.uk/handle/1810/279577

Rights

Attribution 4.0 International (CC BY 4.0)

Licence URL: https://creativecommons.org/licenses/by/4.0/

Statistics

Total file downloads (since January 2020). For more information on metrics see the IRUS guide.

Except where otherwise noted, this item's licence is described as Attribution 4.0 International (CC BY 4.0)