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Finding and sharing: new approaches to registries of databases and services for the biomedical sciences.

Published version
Peer-reviewed

Type

Article

Change log

Authors

Smedley, Damian 
Chen, Chao-Kung 
Aidinis, Vassilis 
Ainali, Chrysanthi 

Abstract

The recent explosion of biological data and the concomitant proliferation of distributed databases make it challenging for biologists and bioinformaticians to discover the best data resources for their needs, and the most efficient way to access and use them. Despite a rapid acceleration in uptake of syntactic and semantic standards for interoperability, it is still difficult for users to find which databases support the standards and interfaces that they need. To solve these problems, several groups are developing registries of databases that capture key metadata describing the biological scope, utility, accessibility, ease-of-use and existence of web services allowing interoperability between resources. Here, we describe some of these initiatives including a novel formalism, the Database Description Framework, for describing database operations and functionality and encouraging good database practise. We expect such approaches will result in improved discovery, uptake and utilization of data resources. Database URL: http://www.casimir.org.uk/casimir_ddf.

Description

Keywords

Biological Science Disciplines, Databases, Factual, Information Dissemination, Information Storage and Retrieval, Internet, Registries

Journal Title

Database (Oxford)

Conference Name

Journal ISSN

1758-0463
1758-0463

Volume Title

2010

Publisher

Oxford University Press (OUP)
Sponsorship
European Commission (37811)