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Evolutionary plasticity in the allosteric regulator-binding site of pyruvate kinase isoform PykA from Pseudomonas aeruginosa.

Accepted version
Peer-reviewed

Type

Article

Change log

Authors

Abdelhamid, Yassmin  ORCID logo  https://orcid.org/0000-0003-0548-158X
Greenhalgh, Jack 
Chee, Xavier 

Abstract

Unlike many other well-characterized bacteria, the opportunistic human pathogen Pseudomonas aeruginosa relies exclusively on the Entner-Doudoroff pathway (EDP) for glycolysis. Pyruvate kinase (PK) is the main "pacemaker" of the EDP, and its activity is also relevant for P. aeruginosa virulence. Two distinct isozymes of bacterial PK have been recognized, PykA and PykF. Here, using growth and expression analyses of relevant PK mutants, we show that PykA is the dominant isoform in P. aeruginosa Enzyme kinetics assays revealed that PykA displays potent K-type allosteric activation by glucose 6-phosphate and by intermediates from the pentose phosphate pathway. Unexpectedly, the X-ray structure of PykA at 2.4 Å resolution revealed that glucose 6-phosphate binds in a pocket that is distinct from the binding site reported for this metabolite in the PK from Mycobacterium tuberculosis (the only other available bacterial PK structure containing bound glucose 6-phosphate). We propose a mechanism by which glucose 6-phosphate binding at the allosteric site communicates with the PykA active site. Taken together, our findings indicate remarkable evolutionary plasticity in the mechanism(s) by which PK senses and responds to allosteric signals.

Description

Keywords

Entner-Doudoroff Pathway, Pseudomonas, Pseudomonas aeruginosa, PykA, X-ray crystallography, allostery, bacterial metabolism, glycolysis, pentose phosphate pathway (PPP), pyruvate kinase, Allosteric Regulation, Allosteric Site, Bacterial Proteins, Catalytic Domain, Glucose-6-Phosphate, Isoenzymes, Models, Molecular, Pentose Phosphate Pathway, Pseudomonas aeruginosa, Pyruvate Kinase

Journal Title

J Biol Chem

Conference Name

Journal ISSN

0021-9258
1083-351X

Volume Title

294

Publisher

Elsevier BV

Rights

All rights reserved
Sponsorship
Biotechnology and Biological Sciences Research Council (BB/M019411/1)
This work was funded by a PhD studentship from the Yousef Jameel Foundation (YA), a BBSRC studentship (to JG) and by BBSRC grant BB/M019411/1.