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An intrinsically disordered proteins community for ELIXIR.

Published version
Peer-reviewed

Type

Article

Change log

Authors

Davey, Norman E 
Babu, M Madan 
Blackledge, Martin 
Bridge, Alan 
Capella-Gutierrez, Salvador  ORCID logo  https://orcid.org/0000-0002-0309-604X

Abstract

Intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) are now recognised as major determinants in cellular regulation. This white paper presents a roadmap for future e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of high-quality tools and resources to support the identification, analysis and functional characterisation of IDPs. The roadmap is the result of a workshop titled "An intrinsically disordered protein user community proposal for ELIXIR" held at the University of Padua. The workshop, and further consultation with the members of the wider IDP community, identified the key priority areas for the roadmap including the development of standards for data annotation, storage and dissemination; integration of IDP data into the ELIXIR Core Data Resources; and the creation of benchmarking criteria for IDP-related software. Here, we discuss these areas of priority, how they can be implemented in cooperation with the ELIXIR platforms, and their connections to existing ELIXIR Communities and international consortia. The article provides a preliminary blueprint for an IDP Community in ELIXIR and is an appeal to identify and involve new stakeholders.

Description

Keywords

ELIXIR, cellular regulation, community standards, databases, intrinsically disordered proteins, protein dynamics, protein function, protein-protein interactions, Intrinsically Disordered Proteins

Journal Title

F1000Res

Conference Name

Journal ISSN

2046-1402
2046-1402

Volume Title

Publisher

F1000 Research Ltd
Sponsorship
Biotechnology and Biological Sciences Research Council (BB/P024092/1)
Wellcome Trust (104948)