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The coding and long noncoding single-cell atlas of the developing human fetal striatum.

Accepted version
Peer-reviewed

Type

Article

Change log

Abstract

Deciphering how the human striatum develops is necessary for understanding the diseases that affect this region. To decode the transcriptional modules that regulate this structure during development, we compiled a catalog of 1116 long intergenic noncoding RNAs (lincRNAs) identified de novo and then profiled 96,789 single cells from the early human fetal striatum. We found that D1 and D2 medium spiny neurons (D1- and D2-MSNs) arise from a common progenitor and that lineage commitment is established during the postmitotic transition, across a pre-MSN phase that exhibits a continuous spectrum of fate determinants. We then uncovered cell type-specific gene regulatory networks that we validated through in silico perturbation. Finally, we identified human-specific lincRNAs that contribute to the phylogenetic divergence of this structure in humans. This work delineates the cellular hierarchies governing MSN lineage commitment.

Description

Keywords

Atlases as Topic, Corpus Striatum, Fetus, GABAergic Neurons, Humans, Neurogenesis, RNA, Long Noncoding, RNA-Seq, Single-Cell Analysis, Transcription Factors, Transcription, Genetic

Journal Title

Science

Conference Name

Journal ISSN

0036-8075
1095-9203

Volume Title

372

Publisher

American Association for the Advancement of Science (AAAS)

Rights

All rights reserved
Sponsorship
Wellcome Trust (203151/Z/16/Z)
European Commission Horizon 2020 (H2020) Societal Challenges (874758)
European Commission (602278)
Medical Research Council (MC_PC_17230)