Supplementary Code and Files for: J. M. Lawrence et. al. "An Expanded Toolset for Electrogenetics" (2022)
View / Open Files
Authors
Publication Date
2021-12-13Alternative Title
"An Expanded Toolset for Electrogenetics" (2022)''
Type
Dataset
Metadata
Show full item recordCitation
Lawrence, J. (2021). Supplementary Code and Files for: J. M. Lawrence et. al. "An Expanded Toolset for Electrogenetics" (2022) [Dataset]. https://doi.org/10.17863/CAM.78759
Description
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Within the "Code" folder can be found all data and the files required to process them
1) Raw data files for each figure are contained within .csv files. E.g. F2e_raw.csv contains the data displayed in figure 2e
2) Code for processing data and plotting figures are contained within .m files. E.g F2e.m processes F2e_raw.csv to create figure 2e
3) Code for fitting response functions are contained within the linear_response.m (for non-responsive contructs), dose_response.m (for responsive Uni-PsoxS & Activator constructs) & inverse_response.m (for responsive Inverter constructs)
4) Other .m files are functions created by others which were used to process and plot data:
i) Rob Campbell (2021). raacampbell/shadedErrorBar (https://github.com/raacampbell/shadedErrorBar), GitHub. Retrieved August 21, 2021.
ii) Ameya Deoras (2021). Customizable Heat Maps (https://www.mathworks.com/matlabcentral/fileexchange/24253-customizable-heat-maps), MATLAB Central File Exchange. Retrieved August 21, 2021.
iii) Stephen Cobeldick (2021). ColorBrewer: Attractive and Distinctive Colormaps (https://github.com/DrosteEffect/BrewerMap), GitHub. Retrieved August 21, 2021.
iv) Martina Callaghan (2021). barwitherr(errors,varargin) (https://www.mathworks.com/matlabcentral/fileexchange/30639-barwitherr-errors-varargin), MATLAB Central File Exchange. Retrieved August 21, 2021.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Within the "DNA" folder can be found all the annotated plasmid maps of plasmids used in the study
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
For any support please email jml203@cam.ac.uk
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
Format
All code written for use in MATLAB (https://www.mathworks.com/products/matlab.html)
Keywords
Synthetic Biology, Electrochemistry, Gene Expression
Relationships
Publication Reference: https://doi.org/10.1126/sciadv.abm5091https://www.repository.cam.ac.uk/handle/1810/337799
Identifiers
This record's DOI: https://doi.org/10.17863/CAM.78759
Rights
Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)
Licence URL: https://creativecommons.org/licenses/by-nd/4.0/
Statistics
Total file downloads (since January 2020). For more information on metrics see the
IRUS guide.
Recommended or similar items
The current recommendation prototype on the Apollo Repository will be turned off on 03 February 2023. Although the pilot has been fruitful for both parties, the service provider IKVA is focusing on horizon scanning products and so the recommender service can no longer be supported. We recognise the importance of recommender services in supporting research discovery and are evaluating offerings from other service providers. If you would like to offer feedback on this decision please contact us on: support@repository.cam.ac.uk