HumanMine: advanced data searching, analysis and cross-species comparison.
View / Open Files
Authors
Bazaga, Adrián
Butano, Daniela
Contrino, Sergio
Heimbach, Joshua
Hu, Fengyuan
Kalderimis, Alexis
Lyne, Mike
Reierskog, Kevin
Stepan, Radek
Sullivan, Julie
Wise, Archie
Yehudi, Yo
Publication Date
2022-07-12Journal Title
Database (Oxford)
ISSN
1758-0463
Publisher
Oxford University Press (OUP)
Type
Article
This Version
AM
Metadata
Show full item recordCitation
Lyne, R., Bazaga, A., Butano, D., Contrino, S., Heimbach, J., Hu, F., Kalderimis, A., et al. (2022). HumanMine: advanced data searching, analysis and cross-species comparison.. Database (Oxford) https://doi.org/10.1093/database/baac054
Abstract
HumanMine (www.humanmine.org) is an integrated database of human genomics and proteomics data that provides a powerful interface to support sophisticated exploration and analysis of data compiled from experimental, computational and curated data sources. Built using the InterMine data integration platform, HumanMine includes genes, proteins, pathways, expression levels, Single nucleotide polymorphism (SNP), diseases and more, integrated into a single searchable database. HumanMine promotes integrative analysis, a powerful approach in modern biology that allows many sources of evidence to be analysed together. The data can be accessed through a user-friendly web interface as well as a powerful, scriptable web service Application programming interface (API) to allow programmatic access to data. The web interface includes a useful identifier resolution system, sophisticated query options and interactive results tables that enable powerful exploration of data, including data summaries, filtering, browsing and export. A set of graphical analysis tools provide a rich environment for data exploration including statistical enrichment of sets of genes or other biological entities. HumanMine can be used for integrative multistaged analysis that can lead to new insights and uncover previously unknown relationships. Database URL: https://www.humanmine.org.
Keywords
database, bioinformatics
Sponsorship
Wellcome Trust (099133/Z/12/Z)
Wellcome Trust (208381/Z/17/B)
Identifiers
External DOI: https://doi.org/10.1093/database/baac054
This record's URL: https://www.repository.cam.ac.uk/handle/1810/338366
Statistics
Total file downloads (since January 2020). For more information on metrics see the
IRUS guide.