Multiomics data integration to reveal chromatin remodeling and reorganization induced by gene mutational synergy.
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Peer-reviewed
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Authors
Yun, Haiyang
Vohra, Shabana
Lara-Astiaso, David
Huntly, Brian JP
Abstract
Recurrent gene mutations often cooperate in a predefined stepwise and synergistic manner to alter global transcription, through directly or indirectly remodeling epigenetic landscape on linear and three-dimensional (3D) scales. Here, we present a multiomics data integration approach to investigate the impact of gene mutational synergy on transcription, chromatin states, and 3D chromatin organization in a murine leukemia model. This protocol provides an executable framework to study epigenetic remodeling induced by cooperating gene mutations and to identify the critical regulatory network involved. For complete details on the use and execution of this protocol, please refer to Yun et al. (2021).
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2666-1667
2666-1667
2666-1667
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Elsevier BV
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Sponsorship
European Research Council (647685)
Kay Kendall Leukaemia Fund (KKL1243)
Cancer Research UK (25508)
Medical Research Council (MR/R009708/1)
Wellcome Trust (203151/A/16/Z)
Cambridge University Hospitals NHS Foundation Trust (CUH) (146281)
Cancer Research UK (A25117)
Wellcome Trust (203151/Z/16/Z)
National Institute for Health Research (IS-BRC-1215-20014)
Kay Kendall Leukaemia Fund (KKL1243)
Cancer Research UK (25508)
Medical Research Council (MR/R009708/1)
Wellcome Trust (203151/A/16/Z)
Cambridge University Hospitals NHS Foundation Trust (CUH) (146281)
Cancer Research UK (A25117)
Wellcome Trust (203151/Z/16/Z)
National Institute for Health Research (IS-BRC-1215-20014)