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Enhancing the Polygenic Score Catalog with tools for score calculation and ancestry normalization.

Accepted version
Peer-reviewed

Change log

Abstract

Polygenic scores (PGSs) have transformed human genetic research and have multiple potential clinical applications. Here, we present a series of recent enhancements to the PGS Catalog (www.PGSCatalog.org), the largest findable, accessible, interoperable, and reusable (FAIR) repository of PGSs. We highlight the PGS Catalog Calculator (pgsc_calc, https://github.com/PGScatalog/pgsc_calc), an open-source, scalable and portable pipeline to reproducibly calculate PGSs that democratizes equitable PGS applications by implementing genetic ancestry estimation and score normalization using reference data.

Description

Journal Title

Nat Genet

Conference Name

Journal ISSN

1061-4036
1546-1718

Volume Title

Publisher

Springer Nature

Rights and licensing

Except where otherwised noted, this item's license is described as Attribution 4.0 International
Sponsorship
National Institute for Health Research (NIHR) (via Cambridge University Hospitals NHS Foundation Trust (CUH)) (Unknown)
British Heart Foundation (RG/F/23/110103)
British Heart Foundation (RE/18/1/34212)
British Heart Foundation (CH/12/2/29428)
British Heart Foundation (CH/12/2/29428)
British Heart Foundation (RG/18/13/33946)
EPSRC (EP/T022159/1)
European Commission Horizon 2020 (H2020) Societal Challenges (101016775)
National Institute for Health and Care Research (IS-BRC-1215-20014)
National Institutes of Health (NIH) (via European Molecular Biology Laboratory (EMBL)) (U24HG012542/2022)
ESRC (ES/T013192/1)