Repository logo
 

Transcriptional signals of transformation in human cancer.

Published version
Peer-reviewed

Repository DOI


Change log

Authors

Kildisiute, Gerda 
Kalyva, Maria 
Elmentaite, Rasa 
van Dongen, Stijn 
Thevanesan, Christine 

Abstract

BACKGROUND: As normal cells transform into cancers, their cell state changes, which may drive cancer cells into a stem-like or more primordial, foetal, or embryonic cell state. The transcriptomic profile of this final state may encode information about cancer's origin and how cancers relate to their normal cell counterparts. METHODS: Here, we used single-cell atlases to study cancer transformation in transcriptional terms. We utilised bulk transcriptomes across a wide spectrum of adult and childhood cancers, using a previously established method to interrogate their relationship to normal cell states. We extend and validate these findings using single-cell cancer transcriptomes and organ-specific atlases of colorectal and liver cancer. RESULTS: Our bulk transcriptomic data reveals that adult cancers rarely return to an embryonic state, but that a foetal state is a near-universal feature of childhood cancers. This finding was confirmed with single-cell cancer transcriptomes. CONCLUSIONS: Our findings provide a nuanced picture of transformation in human cancer, indicating cancer-specific rather than universal patterns of transformation pervade adult epithelial cancers.

Description

Acknowledgements: Not applicable.

Keywords

Adult, Humans, Liver Neoplasms, Embryonic Development, Fetus, Gene Expression Profiling, Transcriptome

Journal Title

Genome Med

Conference Name

Journal ISSN

1756-994X
1756-994X

Volume Title

16

Publisher

Springer Science and Business Media LLC
Sponsorship
Wellcome Trust (220540/Z/20/A, 223135/Z/21/Z)