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A time- and single-cell-resolved model of murine bone marrow hematopoiesis.

Accepted version
Peer-reviewed

Type

Article

Change log

Authors

Kucinski, Iwo 
Campos, Joana 
Barile, Melania 
Severi, Francesco 
Bohin, Natacha 

Abstract

The paradigmatic hematopoietic tree model is increasingly recognized to be limited, as it is based on heterogeneous populations largely defined by non-homeostatic assays testing cell fate potentials. Here, we combine persistent labeling with time-series single-cell RNA sequencing to build a real-time, quantitative model of in vivo tissue dynamics for murine bone marrow hematopoiesis. We couple cascading single-cell expression patterns with dynamic changes in differentiation and growth speeds. The resulting explicit linkage between molecular states and cellular behavior reveals widely varying self-renewal and differentiation properties across distinct lineages. Transplanted stem cells show strong acceleration of differentiation at specific stages of erythroid and neutrophil production, illustrating how the model can quantify the impact of perturbations. Our reconstruction of dynamic behavior from snapshot measurements is akin to how a kinetoscope allows sequential images to merge into a movie. We posit that this approach is generally applicable to understanding tissue-scale dynamics at high resolution.

Description

Keywords

Hoxb5, differentiation rate, dynamics, hematopoiesis, modeling, progenitors, scRNA-seq, self-renewal, stem cells, Animals, Mice, Bone Marrow, Hematopoietic Stem Cells, Hematopoiesis, Cell Differentiation

Journal Title

Cell Stem Cell

Conference Name

Journal ISSN

1934-5909
1875-9777

Volume Title

Publisher

Elsevier BV
Sponsorship
Wellcome Trust (206328/Z/17/Z)
Wellcome Trust (203151/Z/16/Z)
Wellcome Trust (203151/A/16/Z)
Cancer Research UK (21762)
Bloodwise (18002)
Medical Research Council (MC_PC_17230)
MRC (MR/W031663/1)